• blast 数据库说明


    Peptide Sequence Databases蛋白序列的数据库

    nr
    All non-redundant GenBank CDS translations + RefSeq Proteins + PDB + SwissProt + PIR + PRF
    所有非冗余的的GenBank CDS区的翻译序列 + 参考序列的蛋白 + PDB数据库 + SwissProt蛋白数据库 + PRF蛋白数据库

    refseq
    RefSeq protein sequences from NCBI’s Reference Sequence Project.
    所有NCBI的参考序列

    swissprot
    Last major release of the SWISS-PROT protein sequence database (no updates).
    swissprot的蛋白数据库

    pat
    Proteins from the Patent division of GenPept.
    专利的蛋白数据库

    pdb
    Sequences derived from the 3-dimensional structure from Brookhaven Protein Data Bank.
    PDB数据库

    month
    All new or revised GenBank CDS translation+PDB+SwissProt+PIR+PRF released in the last 30 days.
    一个月内新增加的蛋白序列

    env_nr
    Protein sequences from environmental samples.
    来自environmental samples的蛋白序列

    Nucleotide Sequence Databases核酸数据库
    nr
    All GenBank + RefSeq Nucleotides + EMBL + DDBJ + PDB sequences (excluding HTGS0,1,2, EST, GSS, STS, PAT, WGS). No longer “non-redundant”.
    所有GenBank的核酸序列 + 参考序列中的核酸序列+ EMBL +DDBJ +PDB核酸序列(但不包括HTG,EST,GSS等序列)

    refseq_rna
    RNA entries from NCBI’s Reference Sequence project
    NCBI参考序列中的核酸序列

    refseq_genomic
    Genomic entries from NCBI’s Reference Sequence project
    NCBI参考序列中的基因组序列

    est
    Database of GenBank + EMBL + DDBJ sequences from EST Divisions
    来自GenBank + EMBL + DDBJ 的EST序列

    est_human
    Human subset of est.
    人的EST序列

    est_mouse
    Mouse subset.
    小鼠的EST序列

    est_others
    Non-Mouse, non-Human subset of est.、
    除了人与小鼠之外的EST序列

    gss
    Genome Survey Sequence, includes single-pass genomic data, exon-trapped sequences, and Alu PCR sequences.

    htgs
    Unfinished High Throughput Genomic Sequences: phases 0, 1 and 2 (finished, phase 3 HTG sequences are in nr)
    未发布的高通量的基因组测序

    pat
    Nucleotides from the Patent division of GenBank.
    专利的核酸序列

    pdb
    Sequences derived from the 3-dimensional structure from Brookhaven Protein Data Bank
    PDB核酸序列

    month
    All new or revised GenBank + EMBL + DDBJ + PDB sequences released in the last 30 days.
    一个月内新增的核酸序列

    dbsts
    Database of GenBank+EMBL+DDBJ sequences from STS Divisions .
    STS数据库

    chromosome
    A database with complete genomes and chromosomes from the NCBI Reference Sequence project..
    NCBI参考序列计划中所有的完整基因组和染色体序列

    wgs
    A database for whole genome shotgun sequence entries.
    基因组鸟枪法测序得到的序列

    env_nt
    Nucleotide sequences from environmental samples, including those from Sargasso Sea and Mine Drainage
    projects.
    来自environmental samples的核酸序列。

    附:NCBI在线Blast的图文说明

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  • 原文地址:https://www.cnblogs.com/nkwy2012/p/6438241.html
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