samtools在内存与core大量使用时容易出错:如
samtools sort: failed to create temporary file "TCGA-B0-5117-01A-01R-1420-07/hisat2_result/tmp.0000.bam": Cannot send after transport endpoint shutdown
33662 Aborted (core dumped) | samtools sort -@12 - $1/hisat2_result/$1.sort
[bam_merge_core] fail to open file TCGA-A3-3313-01A-02R-1325-07/hisat2_result/TCGA-A3-3313-01A-02R-1325-07.sort.0026.bam
这并不是命令出错