- 参考地址:
https://www.biostars.org/p/56246/
-q INT only include reads with mapping quality >= INT [0]
Like for getting the unique reads (a single read mapping at one best position)
命令如下,也有文献报告使用的-q 2
samtools view -bq 1 file.bam > unique.bam
-q 2
samtools view -bq 1 file.bam > unique.bam