其实好多东西装过好多次,然而每次都要翻文档,经常掉进前面掉进过的坑。。。所以这里重新写一份指南,以防下次再装又忘了(魂淡我并不想再装了啊不要立flag)
1. 安装biopython
1.1 因为biopython目前支持的是python2,所以我先把python调到2
1.2 安装numpy (http://www.numpy.org/)
NumPy is the fundamental package for scientific computing with Python. It contains among other things:
- a powerful N-dimensional array object
- sophisticated (broadcasting) functions
- tools for integrating C/C++ and Fortran code
- useful linear algebra, Fourier transform, and random number capabilities
下载,解压,安装:
cd numpy-1.11.2
好吧,问题来了。现在需要1.3
1.3 安装setuptools
sudo apt-get install python-setuptools
sudo apt-get install python-pip(顺手装了pip)
1.4 然而我会报错
RuntimeError: Running cythonize failed!
所以。。。换用这个命令:sudo apt-get install python-numpy
显示安装成功。
1.5 安装Biopython
$ sudo easy_install -f http://biopython.org/DIST/ biopython
1.6 检验